bg-szy

Comprehensive dependency mapping, analysis, and visualization tool for software projects

Find cross-database references between NCBI databases using Biopython Bio.Entrez (ELink). Use when navigating gene to protein/structure, sequence to publication, PubMed to GEO, BioProject to SRA runs, or discovering all link relationships for a record. Covers linkname semantics, cmd= variants, asymmetric link warnings, neighbor_history for >200 input IDs, and per-database link tables.

View, query, and understand VCF/BCF variant files using bcftools and cyvcf2. Use when inspecting variants, extracting specific fields, or understanding VCF format structure.

Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file type and generates detailed markdown reports with format-specific analysis, quality metrics, and downstream analysis recommendations. Covers

Expert at Playwright E2E tests, Vitest unit tests, Storybook interaction tests. Use when writing tests, debugging test failures, or improving test coverage.

Analyze multi-modal single-cell data (CITE-seq, Multiome, spatial). Use when working with data that measures multiple modalities per cell like RNA + protein or RNA + ATAC. Use when analyzing CITE-seq, Multiome, or other multi-modal single-cell data.

Ship workflow: detect + merge base branch, run tests, review diff, bump VERSION, update CHANGELOG, commit, push, create PR. Use when asked to "ship", "deploy", "push to main", "create a PR", "merge and push", or "get it deployed". Proactively invoke this skill (do NOT push/PR directly) when the user says code is ready, asks about deploying, wants to push code up, or asks to create a PR. (gstack)

Melhores práticas para criar pull requests no GitHub, abordando commits convencionais, formatação de PRs e suporte multilíngue (en/ja). Utilize ao criar PRs, escrever descrições ou formatar mensagens de commit.

Assess genome assembly quality using QUAST for contiguity metrics and BUSCO for completeness. Essential for evaluating assembly success and comparing assemblers. Use when evaluating assembly completeness and quality.

You are a configuration management expert specializing in validating, testing, and ensuring the correctness of application configurations. Create comprehensive validation schemas, implement configurat

Implement saga patterns for distributed transactions and cross-aggregate workflows. Use this skill when implementing distributed transactions across microservices where 2PC is unavailable, designing compensating actions for failed order workflows that span inventory, payment, and shipping services, building event-driven saga coordinators for travel booking systems that must roll back hotel, flight

Jest testing patterns, factory functions, mocking strategies, and TDD workflow. Use when writing unit tests, creating test factories, or following TDD red-green-refactor cycle.