Epigenomic Sequence Models: Borzoi and Epiformer
Key Distinctions
- Borzoi: sequence-only input → RNA-seq coverage at 32 bp resolution. Captures splicing, UTR usage, isoform signals
- Epiformer: sequence + conservation track input → chromatin accessibility. Requires precomputed PhyloP scores
- AlphaGenome (2025): unified model for expression, splicing, chromatin, 3D contacts — avoids model-selection but heavier compute
Model Choice Matrix
| Goal | Preferred model |
|---|
[Description truncada. Veja o README completo no GitHub.]