Needleman-Wunsch global and Smith-Waterman local sequence alignment, including DP table fill, traceback, and scoring matrices.
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The exact command may vary by repository. Check the README on GitHub.
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| Needleman-Wunsch (Global) | Smith-Waterman (Local) | |
|---|---|---|
| Aligns | Full sequences end-to-end | Best matching sub-region |
| Init | First row/col = cumulative gap penalty | First row/col = 0 |
| Cell floor | No floor (can go negative) | Floor at 0 |
| Traceback from | Bottom-right corner | Maximum cell in matrix |
| Use when | Same-length homologs, full divergence | Domain search, read mapping |
F
[Description truncada. Veja o README completo no GitHub.]
