scRNA-seq trajectory analysis: pseudotime (DPT), PAGA graph abstraction, and RNA velocity (scVelo). Decision guide, key parameters, and pitfalls.
/plugin marketplace add Pavel-Kravchenko/Bioinformatics
The exact command may vary by repository. Check the README on GitHub.
For the skill author
Shows your skill is listed on Skillteca, generates a backlink and trackable traffic.
[](https://www.skillteca.com.br/skills/bio-applied-trajectory-analysis?utm_source=badge&utm_medium=readme&utm_campaign=badge)
Toolkit for interacting with and testing local web applications using Playwright. Supports verifying frontend functionality, debugging UI behavior, capturing browser screenshots, and viewing browser logs.
Applies Anthropic's official brand colors and typography to any artifact that may benefit from its look-and-feel. Use it when brand colors, style guidelines, visual formatting, or company design standards apply.
Creates distinctive, production-grade frontend interfaces with high design quality, generating creative, polished code and UI design that avoids generic AI aesthetics. Use for building web components, pages, and applications, or for styling/beautifying web UIs.
Suite of tools for creating elaborate, multi-component claude.ai HTML artifacts using modern frontend web technologies (React, Tailwind CSS, shadcn/ui). Use for complex artifacts requiring state management, routing, or shadcn/ui components - not for simple single-file HTML/JSX artifacts.
Category alert
One short email with only the new Design e Frontend skills. 4 minutes of reading, no spam, unsubscribe with one click.
You confirm your email on the first send. No spam. Unsubscribe with one click.
| Method | Tool | Input | Output |
|---|---|---|---|
| Diffusion pseudotime (DPT) | scanpy sc.tl.dpt | k-NN graph + root cell | Pseudotime per cell |
| PAGA | scanpy sc.tl.paga | Cluster labels + k-NN graph | Cluster connectivity graph |
| RNA velocity (steady-state) | scVelo mode='stochastic' | Spliced + unspliced counts | Velocity arrows |
| RNA velocity (dynamical) | scVelo mode='dynamical' | Splic |
[Description truncada. Veja o README completo no GitHub.]
Sign in to comment. Sign in
