SARS-CoV-2 lineage classification (Pango), Freyja wastewater deconvolution, spike protein mutation tracking, and surveillance pipeline tools.
/plugin marketplace add Pavel-Kravchenko/Bioinformatics
The exact command may vary by repository. Check the README on GitHub.
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| Tool | Purpose | Output |
|---|---|---|
| Pangolin | Lineage assignment from consensus | CSV with lineage + confidence |
| Nextclade | Clade + QC + amino acid changes | TSV with quality flags |
| Freyja | Wastewater lineage deconvolution | Lineage fractions per sample |
| GISAID / outbreak.info | Lineage frequency tracking | Web API + download |
[Description truncada. Veja o README completo no GitHub.]
