bio-causal-genomics-fine-mapping

Name: bio-causal-genomics-fine-mapping
Rating: 5 (1 reviews)
Author: bg-szy

Resolves GWAS associations to candidate causal variants and credible sets via SuSiE, susie_rss, FINEMAP, CAVIAR, DAP-G, PAINTOR, PolyFun, SuSiEx, MultiSuSiE, and FOCUS. Use when narrowing a GWAS lead SNP to a 95 percent credible set, choosing between in-sample and reference LD, calibrating non-sparse loci with SuSiE-inf or FINEMAP-inf, integrating functional priors via PolyFun, fine-mapping across

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Updated 14 days ago

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Version Compatibility

Reference examples tested with: susieR 0.12.27+, coloc 5.2.3+, FINEMAP 1.4.2+, PolyFun (head of omerwe/polyfun 2024), PAINTOR V3.0, SuSiEx (head of getian107/SuSiEx), DAP-G (head of xqwen/dap), pyfocus 0.8+, R 4.3+, PLINK 1.9 / 2.0.

Before using code patterns, verify installed versions match. If versions differ:

R: packageVersion('susieR') then ?susie_rss to confirm argument names (e.g., prior_weights vs prior_variance semantics)
CLI: finemap --help

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