bio-chipseq-peak-annotation

Name: bio-chipseq-peak-annotation
Rating: 5 (1 reviews)
Author: bg-szy

Annotate ChIP-seq peaks to genomic features and genes using ChIPseeker. Assign peaks to promoters, exons, introns, and intergenic regions. Find nearest genes and calculate distance to TSS. Generate annotation plots and statistics. Use when annotating ChIP-seq peaks to genomic features.

1stars

Updated 18 days ago

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Version Compatibility

Reference examples tested with: MACS3 3.0+, clusterProfiler 4.10+

Before using code patterns, verify installed versions match. If versions differ:

R: packageVersion('<pkg>') then ?function_name to verify parameters

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Peak Annotation with ChIPseeker

"Annotate my ChIP-seq peaks to genes" → Assign peaks

[Description truncada. Veja o README completo no GitHub.]

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