Version Compatibility
Reference examples tested with: ChIPseeker 1.38+, GenomicFeatures 1.54+, rtracklayer 1.62+, HOMER 4.11+, rGREAT 2.4+, chipenrich 2.26+, pyranges 0.0.129+, pandas 2.2+.
ENCODE cCRE registry expanded to 2.35M human and 927k mouse elements (Nature 2025; Vu Ernst expansion). SCREEN web app at screen.encodeproject.org provides browser access; ENCODE provides bed files for batch annotation.
Peak Annotation
**"What genes and regulatory elements do my peaks correspond to?"
[Description truncada. Veja o README completo no GitHub.]