bio-chipseq-peak-calling

Name: bio-chipseq-peak-calling
Rating: 5 (1 reviews)
Author: bg-szy

ChIP-seq peak calling using MACS3 (or MACS2). Call narrow peaks for transcription factors or broad peaks for histone modifications. Supports input control, fragment size modeling, and various output formats including narrowPeak and broadPeak BED files. Use when calling peaks from ChIP-seq alignments.

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Updated 14 days ago

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Version Compatibility

Reference examples tested with: MACS2 2.2+, MACS3 3.0+

Before using code patterns, verify installed versions match. If versions differ:

CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Peak Calling with MACS3

"Call peaks from my ChIP-seq data" → Identify significantly enriched regions (nar

[Description truncada. Veja o README completo no GitHub.]

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