Version Compatibility
Reference examples tested with: STAR 2.7.11b+, bowtie2 2.5.3+, HISAT2 2.2.1+, samtools 1.19+, CLAM 1.2+, umi_tools 1.1.5+.
Before using code patterns, verify installed versions match. If versions differ:
- CLI:
<tool> --versionthen<tool> --helpto confirm flags
If code throws unexpected errors, introspect the installed binary (<tool> -h) and adapt the example to match the actual CLI rather than retrying.
CLIP-seq Alignment
**"Align preprocessed CLIP reads
[Description truncada. Veja o README completo no GitHub.]