bio-copy-number-gatk-cnv

Name: bio-copy-number-gatk-cnv
Rating: 5 (1 reviews)
Author: bg-szy

Call copy number variants using GATK best practices workflow. Supports both somatic (tumor-normal) and germline CNV detection from WGS or WES data. Use when following GATK best practices or integrating CNV calling with other GATK variant pipelines.

1stars

Updated 15 days ago

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Version Compatibility

Reference examples tested with: GATK 4.5+

Before using code patterns, verify installed versions match. If versions differ:

CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

GATK CNV Workflow

"Call CNVs using GATK best practices" → Collect read counts, build a panel of normals, denoise tumor

[Description truncada. Veja o README completo no GitHub.]

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