bio-crispr-screens-crispresso-editing

Name: bio-crispr-screens-crispresso-editing
Rating: 5 (1 reviews)
Author: bg-szy

Quantifies CRISPR editing outcomes with CRISPResso2 (Clement 2019 Nat Biotechnol) across Cas9-nuclease (indels, HDR), CBE and ABE base editors (target conversion + bystander), and prime editor (pegRNA-templated) modes. Covers single-amplicon (CRISPResso), multi-sample batch (CRISPRessoBatch), pooled-amplicon (CRISPRessoPooled), WGS off-target (CRISPRessoWGS), and sample-comparison (CRISPRessoCompa

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Updated 18 days ago

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Version Compatibility

Reference examples tested with: CRISPResso2 2.2.14+ (pinellolab/CRISPResso2), pandas 2.2+, numpy 1.26+, matplotlib 3.8+.

Before using code patterns, verify installed versions match. If versions differ:

CLI: CRISPResso --version; CRISPRessoBatch --help; CRISPRessoPooled --help; CRISPRessoWGS --help; CRISPRessoCompare --help
Python: from CRISPResso2 import ...

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and

[Description truncada. Veja o README completo no GitHub.]

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