bio-crispr-screens-jacks-analysis

Name: bio-crispr-screens-jacks-analysis
Rating: 5 (1 reviews)
Author: bg-szy

Runs JACKS (Joint Analysis of CRISPR/Cas9 Knockout Screens; Allen et al 2019 Genome Research) which models per-sgRNA log-fold-change as the product of a treatment-dependent gene-essentiality term and a treatment-independent guide-efficacy term. Covers the Bayesian decomposition math, the hierarchical efficacy prior shared across screens performed with the same library, when JACKS outperforms MAGeC

1stars

Updated 18 days ago

View on GitHub ↗

How to add

/plugin marketplace add bg-szy/TOP-SKILLS

The exact command may vary by repository. Check the README on GitHub.

For the skill author

Drop this on your repo README

Shows your skill is listed on Skillteca, generates a backlink and trackable traffic.

[![Listada na Skillteca](https://www.skillteca.com.br/api/badge/bio-crispr-screens-jacks-analysis-bg-szy/svg)](https://www.skillteca.com.br/skills/bio-crispr-screens-jacks-analysis-bg-szy?utm_source=badge&utm_medium=readme&utm_campaign=badge)

Related skills

See all in Pesquisa e Web →

dev-browser

60.3k

Automates browser interactions with persistent page state. Use for navigating websites, filling forms, taking screenshots, extracting web data, testing web apps, or automating browser workflows.

Pesquisa e Web#testby code-yeongyu

agent-browser

55.6k

Browser automation CLI for AI agents. Use when the user needs to interact with websites, including navigating pages, filling forms, clicking buttons, taking screenshots, extracting data, testing web apps, or automating any browser task. Triggers include requests to "open a website", "fill out a form", "click a button", "take a screenshot", "scrape data from a page", "test this web app", "login to

Pesquisa e Web#ai#testby shanraisshan

understand-chat

45.5k

Use when you need to ask questions about a codebase or understand code using a knowledge graph.

Pesquisa e Webby Lum1104

understand-dashboard

45.5k

Launch the interactive web dashboard to visualize a codebase's knowledge graph.

Pesquisa e Webby Lum1104

Category alert

Get new Pesquisa e Web skills every Monday

One short email with only the new Pesquisa e Web skills. 4 minutes of reading, no spam, unsubscribe with one click.

You confirm your email on the first send. No spam. Unsubscribe with one click.

Version Compatibility

Reference examples tested with: JACKS 0.2.0+ (felicityallen/JACKS), pandas 2.2+, numpy 1.26+, scipy 1.12+, matplotlib 3.8+.

Before using code patterns, verify installed versions match. If versions differ:

CLI: python run_JACKS.py --help (run_JACKS.py at the JACKS repo root after clone)
Python: from jacks.jacks_io import runJACKS; help(runJACKS)
GitHub: install via git clone https://github.com/felicityallen/JACKS && cd JACKS && pip install .