bio-epidemiological-genomics-pathogen-typing

Name: bio-epidemiological-genomics-pathogen-typing
Rating: 5 (1 reviews)
Author: bg-szy

Perform multi-locus sequence typing (MLST), core genome MLST, and SNP-based strain typing for bacterial isolate characterization using mlst and chewBBACA. Use when identifying strain types, tracking outbreak clones, or characterizing bacterial isolates.

1stars

Updated 18 days ago

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Version Compatibility

Reference examples tested with: mlst 2.23+, numpy 1.26+, pandas 2.2+, scanpy 1.10+, scipy 1.12+

Before using code patterns, verify installed versions match. If versions differ:

Python: pip show <package> then help(module.function) to check signatures
CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than re

[Description truncada. Veja o README completo no GitHub.]

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