bio-epidemiological-genomics-transmission-inference

Name: bio-epidemiological-genomics-transmission-inference
Rating: 5 (2 reviews)
Author: bg-szy

Infer pathogen transmission networks and identify likely transmission pairs using TransPhylo and outbreak reconstruction algorithms. Estimate who-infected-whom from genomic and epidemiological data. Use when investigating outbreak transmission chains or identifying superspreaders.

2stars

Updated last month

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Version Compatibility

Reference examples tested with: BioPython 1.83+, TreeTime 0.11+, matplotlib 3.8+, numpy 1.26+, pandas 2.2+, scanpy 1.10+

Before using code patterns, verify installed versions match. If versions differ:

Python: pip show <package> then help(module.function) to check signatures
R: packageVersion('<pkg>') then ?function_name to verify parameters

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to

[Description truncada. Veja o README completo no GitHub.]

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