bio-fragment-analysis

Name: bio-fragment-analysis
Rating: 5 (1 reviews)
Author: bg-szy

Analyzes cfDNA fragment size distributions and fragmentomics features using FinaleToolkit or Griffin. Extracts nucleosome positioning patterns, fragment ratios, and DELFI-style fragmentation profiles for cancer detection. Use when leveraging fragment patterns for tumor detection or tissue-of-origin analysis.

1stars

Updated 18 days ago

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Version Compatibility

Reference examples tested with: numpy 1.26+, pandas 2.2+, pysam 0.22+

Before using code patterns, verify installed versions match. If versions differ:

Python: pip show <package> then help(module.function) to check signatures

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Fragment Analysis

"Analyze cfDNA fragment patterns for cancer detection" →

[Description truncada. Veja o README completo no GitHub.]

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