bio-genome-annotation-functional-annotation

Name: bio-genome-annotation-functional-annotation
Rating: 5 (2 reviews)
Author: bg-szy

Assigns GO terms, Pfam/InterPro domains, KEGG orthologs, EC numbers, and product names to predicted proteins using eggNOG-mapper (orthology), InterProScan (domain signatures), and KofamScan (KEGG), routing specialized functions to dbCAN/antiSMASH/AMRFinderPlus/SignalP. Covers the orthology-vs-domain-vs-homology paradigms, the annotation-error percolation cascade, domain-presence-is-not-function, G

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Version Compatibility

Reference examples tested with: eggNOG-mapper 2.1.15 (pin for reproducibility), InterProScan 5.66+, KofamScan 1.3+, pandas 2.2+, AGAT 1.4+.

Before using code patterns, verify installed versions match. If versions differ:

CLI: <tool> --version then <tool> --help to confirm flags
Python: pip show <package> then help(module.function) to check signatures

Annotation content tracks database release: record the eggNOG DB version, InterPro/Pfam release, and KE

[Description truncada. Veja o README completo no GitHub.]

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