bio-genome-intervals-coverage-analysis

Name: bio-genome-intervals-coverage-analysis
Rating: 5 (1 reviews)
Author: bg-szy

Computes and interprets sequencing read depth and coverage over a genome, windows, or target regions with mosdepth (windowed depth, cumulative distribution, --quantize callable BEDs), bedtools genomecov/coverage (bedGraph tracks, per-target stats), samtools depth/coverage (per-base depth, per-contig depth+breadth). Covers the breadth-vs-mean distinction, the cumulative-coverage curve, evenness (CV

1stars

Updated 14 days ago

View on GitHub ↗

How to add

/plugin marketplace add bg-szy/TOP-SKILLS

The exact command may vary by repository. Check the README on GitHub.

For the skill author

Drop this on your repo README

Shows your skill is listed on Skillteca, generates a backlink and trackable traffic.

[![Listada na Skillteca](https://www.skillteca.com.br/api/badge/bio-genome-intervals-coverage-analysis-bg-szy/svg)](https://www.skillteca.com.br/skills/bio-genome-intervals-coverage-analysis-bg-szy?utm_source=badge&utm_medium=readme&utm_campaign=badge)

Related skills

See all in DevOps e Infra →

internal-comms

143.8k

Resources to assist in writing various internal communications, adhering to company-preferred formats. Claude should utilize this skill for status reports, leadership updates, newsletters, FAQs, and other internal documents.

DevOps e Infraby anthropics

babysit

79.7k

Monitors a pull request or review cycle until it is ready to merge. This skill is used to track PR comments, reviews, and CI status until all actionable issues are resolved.

DevOps e Infra#aiby thedotmack

do

79.7k

Execute a phased implementation plan using subagents. Use when asked to execute, run, or carry out a plan — especially one created by make-plan.

DevOps e Infra#aiby thedotmack

smart-explore

79.7k

Token-optimized structural code search using tree-sitter AST parsing. Use this instead of reading full files when you need to understand code structure, find functions, or explore a codebase efficiently.

DevOps e Infra#aiby thedotmack

Category alert

Get new DevOps e Infra skills every Monday

One short email with only the new DevOps e Infra skills. 4 minutes of reading, no spam, unsubscribe with one click.

You confirm your email on the first send. No spam. Unsubscribe with one click.

Version Compatibility

Reference examples tested with: bedtools 2.31+, mosdepth 0.3+, samtools 1.19+, pybedtools 0.10+, numpy 1.26+.

Before using code patterns, verify installed versions match. If versions differ:

CLI: <tool> --version then <tool> --help to confirm flags
Python: pip show <package> then help(module.function) to check signatures

samtools depth behaviour changed across versions: pre-1.13 capped depth at 8000 and truncated silently (-d 0 = unlimited); 1.13+ rewr

[Description truncada. Veja o README completo no GitHub.]

ShareX LinkedIn

Comments · No comments

No comments yet. Be the first.