bio-longread-alignment

Name: bio-longread-alignment
Rating: 5 (1 reviews)
Author: bg-szy

Align long reads using minimap2 for Oxford Nanopore and PacBio data. Supports various presets for different read types and applications. Use when aligning ONT or PacBio reads to a reference genome for variant calling, SV detection, or coverage analysis.

1stars

Updated 13 days ago

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Version Compatibility

Reference examples tested with: minimap2 2.26+, samtools 1.19+

Before using code patterns, verify installed versions match. If versions differ:

CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Long-Read Alignment with minimap2

"Align my long reads to the reference" → Map ONT or PacBio read

[Description truncada. Veja o README completo no GitHub.]

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