bio-pathway-gsea

Name: bio-pathway-gsea
Rating: 5 (2 reviews)
Author: bg-szy

Gene Set Enrichment Analysis using clusterProfiler gseGO and gseKEGG. Use when analyzing ranked gene lists to find coordinated expression changes in gene sets without arbitrary significance cutoffs. Detects subtle but coordinated expression changes.

2stars

Updated 2 days ago

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/plugin marketplace add bg-szy/TOP-SKILLS

The exact command may vary by repository. Check the README on GitHub.

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Version Compatibility

Reference examples tested with: DESeq2 1.42+

Before using code patterns, verify installed versions match. If versions differ:

R: packageVersion('<pkg>') then ?function_name to verify parameters

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Gene Set Enrichment Analysis (GSEA)

Core Concept

GSEA uses all genes ranked by a statistic (log2FC, s

[Description truncada. Veja o README completo no GitHub.]

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