bio-read-qc-quality-filtering

Name: bio-read-qc-quality-filtering
Rating: 5 (1 reviews)
Author: bg-szy

Filter reads by quality scores, length, and N content using Trimmomatic and fastp. Apply sliding window trimming, remove low-quality bases from read ends, and discard reads below thresholds. Use when reads have poor quality tails or require minimum quality for downstream analysis.

1stars

Updated 13 days ago

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Version Compatibility

Reference examples tested with: Trimmomatic 0.39+, cutadapt 4.4+, fastp 0.23+

Before using code patterns, verify installed versions match. If versions differ:

CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Quality Filtering

Trim low-quality bases and filter reads using Trimmomatic sliding wi

[Description truncada. Veja o README completo no GitHub.]

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