bio-rna-quantification-alignment-free-quant

Name: bio-rna-quantification-alignment-free-quant
Rating: 5 (1 reviews)
Author: bg-szy

Quantify transcript expression using pseudo-alignment with Salmon or kallisto. Use when quantifying transcripts with Salmon or kallisto.

1stars

Updated 18 days ago

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Version Compatibility

Reference examples tested with: Salmon 1.10+, fastp 0.23+, kallisto 0.50+, pandas 2.2+

Before using code patterns, verify installed versions match. If versions differ:

CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Alignment-Free Quantification

*"Quantify gene expression without alignment"

[Description truncada. Veja o README completo no GitHub.]

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