Outbreak Pipeline
Complete workflow for genomic epidemiology: from pathogen isolates to transmission networks and outbreak characterization.
Wor
[Description truncada. Veja o README completo no GitHub.]
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bio-workflows-outbreak-pipeline
End-to-end outbreak investigation from pathogen isolates to transmission networks. Orchestrates MLST typing, AMR surveillance, phylodynamic dating, and transmission inference with TransPhylo. Use when investigating disease outbreaks or tracking pathogen transmission chains.
1stars
Updated 15 days ago
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