cellxgene-census

Name: cellxgene-census
Rating: 5 (1 reviews)
Author: LeoLin990405

Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For analyzing your own data use scanpy or scvi-tools.

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Updated last month

View on GitHub ↗License: MIT

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CZ CELLxGENE Census

Overview

The CZ CELLxGENE Census provides programmatic access to a comprehensive, versioned collection of standardized single-cell genomics data from CZ CELLxGENE Discover. This skill enables efficient querying and analysis of millions of cells across thousands of datasets.

The Census includes:

61+ million cells from human and mouse
Standardized metadata (cell types, tissues, diseases, donors)
Raw gene expression matrices
**Pre-calculated embedding

[Description truncada. Veja o README completo no GitHub.]

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