ocean-genomics

Name: ocean-genomics
Rating: 5 (1 reviews)
Author: broomva

Comprehensive bioinformatics and ocean genomics skill for eDNA metabarcoding, metagenomics, protein structure prediction, and marine biodiversity analysis. Use when: (1) Working with DNA/RNA sequences (FASTQ, FASTA, SAM/BAM, VCF files), (2) Running BLAST, QIIME2, Kraken2, or Nextflow pipelines, (3) Predicting protein structures via AlphaFold, ESMFold, or ColabFold, (4) Analyzing environmental DNA

1stars

Updated 13 days ago

View on GitHub ↗License: MIT

How to add

/plugin marketplace add broomva/skills

The exact command may vary by repository. Check the README on GitHub.

For the skill author

Drop this on your repo README

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Ocean Genomics

Agentic bioinformatics skill for ocean genomics — from eDNA water sampling to species identification, protein structure prediction, and scientific insight publication.

Quick Start

1. Set Up MCP Integration

Install gget-MCP for immediate access to BLAST, AlphaFold, sequence retrieval, and 9 other genomics tools:

// Add to .claude/settings.json → mcpServers
{
  "gget-mcp": {
    "command": "uvx",
    "args": ["--from", "gget-mcp@latest", "stdio"]
  }
}

[Description truncada. Veja o README completo no GitHub.]

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