Pysam
Overview
Pysam is a Python module for reading, manipulating, and writing genomic datasets. Read/write SAM/BAM/CRAM alignment files, VCF/BCF variant files, and FASTA/FASTQ sequences with a Pythonic interface to htslib. Query tabix-indexed files, perform pileup analysis for coverage, and execute samtools/bcftools commands.
When to Use This Skill
This skill should be used when:
- Working with sequencing alignment files (BAM/CRAM)
- Analyzing genetic variants (VCF/BCF)
- Extracting
[Description truncada. Veja o README completo no GitHub.]