python-core-bio

Name: python-core-bio
Rating: 5 (3 reviews)
Author: Pavel-Kravchenko

Core Python for bioinformatics: types, bio-string manipulation (codons, reverse complement), functions, and file I/O for FASTA/GenBank.

3stars

Updated 4 months ago

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#python #ai

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Python Core for Bioinformatics

When to Use

Writing DNA/RNA/protein sequence manipulation code from scratch
Parsing FASTA, FASTQ, CSV, TSV, JSON, GenBank files
Implementing GC content, codon tables, ORF finding, reverse complement
Designing reusable functions for sequence pipelines
Handling large files without loading them into memory

Quick Reference

DNA/RNA Alphabet and Validation

VALID_DNA = set("ATGC")
VALID_RNA = set("AUGC")
is_valid = all(c in VALID_DNA for

[Description truncada. Veja o README completo no GitHub.]

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