RNA-seq, Metagenomics & Regulatory Analysis
When to Use
- Differential gene expression from RNA-seq count data
- Comparing expression normalization strategies (RPKM/TPM/DESeq2)
- 16S rRNA amplicon microbiome studies (OTU/ASV, alpha/beta diversity)
- Promoter scanning: TATA box detection, CpG island calling, PWM/TFBS scanning
Quick Reference
RNA-seq Workflow
FASTQ → QC (FastQC/fastp) → Alignment (STAR/HISAT2) → Count (featureCounts/HTSeq)
OR
[Description truncada. Veja o README completo no GitHub.]