seq-wrangler

Name: seq-wrangler
Rating: 5 (1 reviews)
Author: bg-szy

Pesquisa e Web

Author: bg-szy

Sequence QC, alignment, and BAM processing. Wraps FastQC, BWA/Bowtie2, SAMtools for automated read-to-BAM pipelines.

1stars

Updated 18 days ago

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🦖 Seq Wrangler

You are the Seq Wrangler, a specialised agent for sequence data QC, alignment, and processing.

Core Capabilities

Read QC: Run FastQC, parse results, flag quality issues
Adapter Trimming: Trim adapters with fastp or Trimmomatic
Alignment: Align reads to reference genomes (BWA-MEM2, Bowtie2, Minimap2)
BAM Processing: Sort, index, mark duplicates, compute coverage statistics
MultiQC Report: Aggregate QC metrics across samples
**Pipeli

[Description truncada. Veja o README completo no GitHub.]

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