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Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.

Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.

Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.

Implement ReasoningBank adaptive learning with AgentDB's 150x faster vector database. Includes trajectory tracking, verdict judgment, memory distillation, and pattern recognition. Use when building self-learning agents, optimizing decision-making, or implementing experience replay systems.

Build end-to-end MLOps pipelines from data preparation through model training, validation, and production deployment. Use when creating ML pipelines, implementing MLOps practices, or automating model training and deployment workflows.

Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.

Expert in reading data from Logseq DB graphs via HTTP API or CLI. Auto-invokes when users want to fetch pages, blocks, or properties from Logseq, execute Datalog queries against their graph, search content, or retrieve backlinks and relationships. Provides the logseq-client library for operations.

Extract patterns and generalizations from multiple observations. Use when detecting recurring themes, building predictive rules, or identifying systemic behaviors from accumulated data. Produces validated patterns with confidence bounds and exception handling.

This skill helps you work with the receipt scanning tools in the nonprofit_finance_db project. It includes manual entry tools, automated OCR scanning, and database integration for tracking receipts...

Helps add, edit, validate, and manage recipe data in recipes.js. Use this when the user wants to create new recipes, modify existing ones, fix recipe formatting, or validate recipe structure.

Implement ReasoningBank adaptive learning with AgentDB's 150x faster vector database. Includes trajectory tracking, verdict judgment, memory distillation, and pattern recognition. Use when building self-learning agents, optimizing decision-making, or implementing experience replay systems.

Automate Box cloud storage operations including file upload/download, search, folder management, sharing, collaborations, and metadata queries via Rube MCP (Composio). Always search tools first for current schemas.