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convex

1

Umbrella skill for all Convex development patterns. Routes to specific skills like convex-functions, convex-realtime, convex-agents, etc.

DevOps e Infraby bg-szy

bio-workflows-fastq-to-variants

1

End-to-end DNA sequencing workflow from FASTQ files to variant calls. Covers QC, alignment with BWA, BAM processing, and variant calling with bcftools or GATK HaplotypeCaller. Use when calling variants from raw sequencing reads.

DevOps e Infraby bg-szy

bio-workflows-fastq-to-variants

1

End-to-end DNA sequencing workflow from FASTQ files to variant calls. Covers QC, alignment with BWA, BAM processing, and variant calling with bcftools or GATK HaplotypeCaller. Use when calling variants from raw sequencing reads.

DevOps e Infraby bg-szy

chromosomal-instability-agent

1

AI-powered analysis of chromosomal instability (CIN) signatures for cancer prognosis, immunotherapy response prediction, and therapeutic vulnerability identification.

DevOps e Infra#aiby bg-szy

chatehr-clinician-assistant

1

EHR Chat Assistant

DevOps e Infraby bg-szy

coordinating-projects

1

Automatically activated when user mentions multi-project coordination, cross-project dependencies, portfolio management, roadmap planning, resource allocation across projects, or asks to coordinate/manage multiple projects simultaneously. Provides strategic project coordination expertise.

DevOps e Infraby bg-szy

aws-serverless

1

Specialized skill for building production-ready serverless applications on AWS. Covers Lambda functions, API Gateway, DynamoDB, SQS/SNS event-driven patterns, SAM/CDK deployment, and cold start optimization.

DevOps e Infra#deploy#apiby bg-szy

clinical-decision-support-documents

1

Guidelines for clinical decision support (CDS) documents: biomarker-stratified cohort analyses and GRADE-graded treatment reports. Covers structure, executive summaries, evidence grading (1A–2C), stats (HR, CI, survival), and biomarker integration. Use for pharma research docs, clinical guidelines, regulatory submissions.

DevOps e Infraby bg-szy

clinical-decision-support

1

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integrat

DevOps e Infraby bg-szy

clinical-diagnostic-reasoning

1

Identify and counteract cognitive biases in medical decision-making through systematic error analysis and contextual algorithm application. For diagnostic reasoning, treatment decisions, and

DevOps e Infraby bg-szy

clinical-note-summarization

1

Structure raw clinical notes into SOAP-format summaries with explicit contradictions, missing data, and ICD-linked assessments using the provided prompt + usage script.

DevOps e Infraby bg-szy

cost-optimization

1

Optimize cloud costs across AWS, Azure, GCP, and OCI through resource rightsizing, tagging strategies, reserved instances, and spending analysis. Use when reducing cloud expenses, analyzing infrastructure costs, or implementing cost governance policies.

DevOps e Infraby bg-szy