Explore skills

Container vulnerability scanning and dependency risk assessment using Grype with CVSS severity ratings, EPSS exploit probability, and CISA KEV indicators. Use when: (1) Scanning container images and filesystems for known vulnerabilities, (2) Integrating vulnerability scanning into CI/CD pipelines with severity thresholds, (3) Analyzing SBOMs (Syft, SPDX, CycloneDX) for security risks, (4) Prioriti

Assigns isolate identity at the right resolution for the question -- ANI / Mash species triage, 7-locus MLST historical comparability, cgMLST / wgMLST outbreak resolution (chewBBACA, BIGSdb, Ridom SeqSphere, EnteroBase HierCC), in-silico serotyping (SISTR, SeqSero2 for Salmonella; SerotypeFinder for E. coli; Kaptive K/O for Klebsiella; SeroBA for pneumococcus; spa + SCCmec for S. aureus), and line

Cloud infrastructure design and deployment patterns for AWS, Azure, and

This comprehensive Cloudflare platform skill covers Workers, Pages, storage (KV, D1, R2), AI, feature flags, networking, security, and infrastructure-as-code. It's designed for any Cloudflare development task, prioritizing information retrieval from Cloudflare documentation.

Dockerfile security linting and best practice validation using Hadolint with 100+ built-in rules aligned to CIS Docker Benchmark. Use when: (1) Analyzing Dockerfiles for security misconfigurations and anti-patterns, (2) Enforcing container image security best practices in CI/CD pipelines, (3) Detecting hardcoded secrets and credentials in container builds, (4) Validating compliance with CIS Docker

Infers person-to-person transmission from pathogen genomes using outbreaker2 (Campbell 2018), TransPhylo (Didelot 2017), phybreak (Klinkenberg 2017), BadTrIP (De Maio 2018), SCOTTI (De Maio 2016), BEASTLIER (Hall 2015), and SNP-distance / cluster-picker approaches (HIV-TRACE for HIV; transcluster). Defines outbreak clusters using pathogen-specific SNP thresholds (NOT a universal cutoff -- TB <=12

Create, manage, and optimize LXC containers in Proxmox. Control container lifecycle, manage resources, and coordinate container deployments across nodes.

Docker and Kubernetes patterns. Triggers on: Dockerfile, docker-compose, kubernetes, k8s, helm, pod, deployment, service, ingress, container, image.

Generic Cloud-Native Deployment and Infrastructure as Code patterns for 2025. It provides comprehensive implementation strategies for multi-cloud deployments, GitOps workflows, progressive delivery, and platform engineering, with a framework-agnostic approach supporting any cloud provider, deployment tool, and orchestration platform.

Context management specialist for multi-agent workflows and long-running

Migration monitoring, CDC, and observability infrastructure

Stores and operates on sparse expression matrices for single-cell and large bulk RNA-seq, covering dgCMatrix/dgRMatrix/dgTMatrix when-each-is-fast, the dgCMatrix (CSC, R) <-> CSR (Python) implicit transpose, AnnData (cells-rows) <-> SingleCellExperiment (cells-cols) orientation flip, HDF5/h5ad vs Zarr cloud-native shift, HDF5SummarizedExperiment + DelayedArray for out-of-memory bulk, scanpy backed