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bio-alignment-filtering
Filter alignments by flags, mapping quality, and regions using samtools view and pysam. Use when extracting specific reads, removing low-quality alignments, or subsetting to target regions.
performance-profiler
Identifies performance bottlenecks including N+1 queries, inefficient loops, memory leaks, and slow algorithms. Use when user mentions performance issues, slow code, optimization, or profiling.
trust-badges-generator
When the user wants to add or optimize trust badges, "Trusted by" logos, security seals, or social proof elements. Also use when the user mentions "trust badges," "trusted by," "security badges," "payment logos," "social proof," "trust seals," "SSL badge," "customer logos," "as seen in," or "trust signals." For press logos, use press-coverage-page-generator.
pinia
Pinia official Vue state management library, type-safe and extensible. Use when defining stores, working with state/getters/actions, or implementing store patterns in Vue apps.
bio-consensus-sequences
Generate consensus FASTA sequences by applying VCF variants to a reference using bcftools consensus. Use when creating sample-specific reference sequences or reconstructing haplotypes.
infrastructure
Infrastructure as Code patterns for deploying Guts nodes using Terraform, Docker, and Kubernetes
virtual-machine-management
Create, manage, and optimize virtual machines in Proxmox. Control VM lifecycle, monitor performance, adjust resources, and plan VM deployment strategies.
secrets-gitleaks
Hardcoded secret detection and prevention in git repositories and codebases using Gitleaks. Identifies passwords, API keys, tokens, and credentials through regex-based pattern matching and entropy analysis. Use when: (1) Scanning repositories for exposed secrets and credentials, (2) Implementing pre-commit hooks to prevent secret leakage, (3) Integrating secret detection into CI/CD pipelines, (4)
qiskit
IBM quantum computing framework. Use when targeting IBM Quantum hardware, working with Qiskit Runtime for production workloads, or needing IBM optimization tools. Best for IBM hardware execution, quantum error mitigation, and enterprise quantum computing. For Google hardware use cirq; for gradient-based quantum ML use pennylane; for open quantum system simulations use qutip.
bio-comparative-genomics-hgt-detection
Detect horizontal gene transfer (HGT / LGT) using compositional methods (GC%, codon usage, tetranucleotide z-scores via SIGI-HMM, AlienHunter, IslandViewer 4, IslandPath-DIMOB), phylogenetic-incongruence methods (AvP, HGTphyloDetect, ALE / GeneRax / AleRax reconciliation, RANGER-DTL), and BLAST-distribution methods (HGTector v2, DarkHorse, Alien Index). Use when screening prokaryote genomes for ge
ms365-tenant-manager
Comprehensive Microsoft 365 tenant administration skill for setup, configuration, user management, security policies, and organizational structure optimization for Global Administrators.
vercel-deployment
Expert knowledge for deploying to Vercel with Next.js Use when: vercel, deploy, deployment, hosting, production.