Version Compatibility
Reference examples tested with: MACS3 3.0.4+, MACS2 2.2.9+, HOMER 4.11+, SPP 1.16+, samtools 1.19+, bedtools 2.31+, IDR 2.0.4+.
Before running, verify versions: <tool> --version and <tool> --help to confirm flags. If a flag is missing, check the changelog — MACS2->MACS3 is API-compatible for callpeak but predictd, bdgpeakcall, and hmmratac differ.
ChIP-seq Peak Calling
"Identify protein-DNA binding sites from ChIP-seq alignments" -> Detect statistic
[Description truncada. Veja o README completo no GitHub.]