Version Compatibility
Reference examples tested with: Bowtie2 2.5.3+, MetaPhlAn 4.1+, minimap2 2.26+, pandas 2.2+, scanpy 1.10+
Before using code patterns, verify installed versions match. If versions differ:
- Python:
pip show <package>thenhelp(module.function)to check signatures - CLI:
<tool> --versionthen<tool> --helpto confirm flags
If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rath
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