Outbreak Pipeline
Complete workflow for genomic epidemiology: from pathogen isolates to transmission networks and outbreak characterization.
Wor
[Description truncada. Veja o README completo no GitHub.]
End-to-end outbreak investigation from pathogen isolates to transmission networks. Orchestrates MLST typing, AMR surveillance, phylodynamic dating, and transmission inference with TransPhylo. Use when investigating disease outbreaks or tracking pathogen transmission chains.
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Creates an SVG weather card showing the current temperature for Dubai. Writes the SVG to orchestration-workflow/weather.svg and updates orchestration-workflow/output.md.
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Automate Segment tasks via Rube MCP (Composio): track events, identify users, manage groups, page views, aliases, batch operations. Always search tools first for current schemas.
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Complete workflow for genomic epidemiology: from pathogen isolates to transmission networks and outbreak characterization.
[Description truncada. Veja o README completo no GitHub.]
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