Explorar skills

Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics.

Async/await patterns for FastAPI and SQLAlchemy. Use when working with async code, database sessions, concurrent operations, or debugging async issues in Python.

Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics.

Pydantic v2 patterns for validation and serialization. Use when creating schemas, validating data, or working with request/response models.

SQLModel and async SQLAlchemy patterns. Use when working with database models, queries, relationships, or debugging ORM issues.

Alembic migration patterns for PostgreSQL. Use when creating migrations, reviewing autogenerated migrations, or handling schema changes safely.

Create Pydantic models following the multi-model pattern with Base, Create, Update, Response, and InDB variants. Use when defining API request/response schemas, database models, or data validation in Python applications using Pydantic v2.

Data validation and settings management using Python type annotations with Pydantic v2

Complete mass spectrometry analysis platform. Use for proteomics workflows feature detection, peptide identification, protein quantification, and complex LC-MS/MS pipelines. Supports extensive file formats and algorithms. Best for proteomics, comprehensive MS data processing. For simple spectral comparison and metabolite ID use matchms.

Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.

Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecular oracles, for therapeutic ML and pharmacological prediction.

Python FastAPI development with uv package manager, modular project structure, SQLAlchemy ORM, and production-ready patterns.