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container-grype
Container vulnerability scanning and dependency risk assessment using Grype with CVSS severity ratings, EPSS exploit probability, and CISA KEV indicators. Use when: (1) Scanning container images and filesystems for known vulnerabilities, (2) Integrating vulnerability scanning into CI/CD pipelines with severity thresholds, (3) Analyzing SBOMs (Syft, SPDX, CycloneDX) for security risks, (4) Prioriti
bio-epidemiological-genomics-pathogen-typing
Assigns isolate identity at the right resolution for the question -- ANI / Mash species triage, 7-locus MLST historical comparability, cgMLST / wgMLST outbreak resolution (chewBBACA, BIGSdb, Ridom SeqSphere, EnteroBase HierCC), in-silico serotyping (SISTR, SeqSero2 for Salmonella; SerotypeFinder for E. coli; Kaptive K/O for Klebsiella; SeroBA for pneumococcus; spa + SCCmec for S. aureus), and line
cloud-infrastructure
Patrones de diseño e implementación de infraestructura en la nube para AWS, Azure y
cloudflare
Esta habilidad integral de la plataforma Cloudflare abarca Workers, Pages, almacenamiento (KV, D1, R2), IA, feature flags, redes, seguridad e infraestructura como código. Es ideal para cualquier tarea de desarrollo en Cloudflare, priorizando la recuperación de información de la documentación oficial.
container-hadolint
Dockerfile security linting and best practice validation using Hadolint with 100+ built-in rules aligned to CIS Docker Benchmark. Use when: (1) Analyzing Dockerfiles for security misconfigurations and anti-patterns, (2) Enforcing container image security best practices in CI/CD pipelines, (3) Detecting hardcoded secrets and credentials in container builds, (4) Validating compliance with CIS Docker
bio-epidemiological-genomics-transmission-inference
Infers person-to-person transmission from pathogen genomes using outbreaker2 (Campbell 2018), TransPhylo (Didelot 2017), phybreak (Klinkenberg 2017), BadTrIP (De Maio 2018), SCOTTI (De Maio 2016), BEASTLIER (Hall 2015), and SNP-distance / cluster-picker approaches (HIV-TRACE for HIV; transcluster). Defines outbreak clusters using pathogen-specific SNP thresholds (NOT a universal cutoff -- TB <=12
container-management
Create, manage, and optimize LXC containers in Proxmox. Control container lifecycle, manage resources, and coordinate container deployments across nodes.
container-orchestration
Docker and Kubernetes patterns. Triggers on: Dockerfile, docker-compose, kubernetes, k8s, helm, pod, deployment, service, ingress, container, image.
cloud-native
Patrones genéricos de Implementación Cloud-Native e Infraestructura como Código para 2025. Proporciona estrategias de implementación integrales para despliegues multi-nube, flujos de trabajo GitOps, entrega progresiva e ingeniería de plataformas, con un enfoque agnóstico de frameworks que soporta cualquier proveedor de nube, herramienta de despliegue y plataforma de orquestación.
context-management
Context management specialist for multi-agent workflows and long-running
database-migrations-migration-observability
Migration monitoring, CDC, and observability infrastructure
bio-expression-matrix-sparse-handling
Stores and operates on sparse expression matrices for single-cell and large bulk RNA-seq, covering dgCMatrix/dgRMatrix/dgTMatrix when-each-is-fast, the dgCMatrix (CSC, R) <-> CSR (Python) implicit transpose, AnnData (cells-rows) <-> SingleCellExperiment (cells-cols) orientation flip, HDF5/h5ad vs Zarr cloud-native shift, HDF5SummarizedExperiment + DelayedArray for out-of-memory bulk, scanpy backed