Viral Phylodynamics and Molecular Epidemiology
Substitution Rates (Common Viruses)
| Virus | Rate (subs/site/year) | Notes |
|---|---|---|
| SARS-CoV-2 | ~1 × 10⁻³ | ~1–2 SNPs per 2 weeks |
| Influenza A (HA) | 3–5 × 10⁻³ | High immune selection |
| HIV-1 | 2–4 × 10⁻³ | Highest among RNA viruses |
| Hepatitis C | 1–2 × 10⁻³ | Chronic, slow |
| Measles | ~5 × 10⁻⁴ | More conserved |
Tool Selection
| Tool | Approach | Speed | Use Case | |------|----------|--
[Description truncada. Veja o README completo no GitHub.]