Version Compatibility
Reference examples tested with: HOMER 4.11+, MEME Suite 5.5+ (STREME, MEME-ChIP, FIMO), bedtools 2.31+, kpLogo 1.1+, mCross v1+, PEKA v1+, RBPamp 0.9+, ggseqlogo 0.1+, biopython 1.83+.
Before using code patterns, verify installed versions match. If versions differ:
- CLI:
<tool> --versionthen<tool> --helpto confirm flags - Python:
pip show <package>thenhelp(module.function)to check signatures
If code throws unexpected errors, introspect the installed too
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