Version Compatibility
Reference examples tested with: CNVkit 0.9.10+, samtools 1.19+, bedtools 2.31+, Python 3.10+, R 4.3+ with DNAcopy 1.76+.
Before using code patterns, verify installed versions match. If versions differ:
- CLI:
cnvkit.py versionthencnvkit.py batch --helpto confirm flags - Python:
pip show cnvkitthenpython -c "import cnvlib; help(cnvlib.read)" - R:
packageVersion('DNAcopy')(CBS backend)
If a command throws an unrecognized-argument or AttributeError, intro
[Description truncada. Veja o README completo no GitHub.]