Version Compatibility
Reference examples tested with: GISTIC 2.0.23, R 4.3+ with CINSignatureQuantification 1.2+; Python 3.10+ with SigProfilerAssignment 0.1+ (optional, COSMIC CN signatures).
Before using code patterns, verify installed versions match. If versions differ:
- CLI:
gistic2 --help(GISTIC 2.0 is a MATLAB-compiled binary; needs the MCR runtime) - R:
packageVersion('CINSignatureQuantification') - Python:
pip show SigProfilerAssignment
GISTIC 2.0 has had no substantive rel
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