Version Compatibility
Reference examples tested with: bedtools 2.31+, pybedtools 0.10+, pyranges 0.1+ (or 1.0+ - see note), bioframe 0.7+.
Before using code patterns, verify installed versions match. If versions differ:
- CLI:
bedtools --versionthenbedtools <subcommand> --helpto confirm flags - Python:
pip show <package>thenhelp(module.function)to check signatures
pyranges has a major-version API split: pyranges 0.x and the 1.0 rewrite (package pyranges1) differ in method n
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