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bio-read-alignment-bowtie2-alignment

Align short reads using Bowtie2 with local or end-to-end modes. Supports gapped alignment. Use when aligning ChIP-seq, ATAC-seq, or when flexible alignment modes are needed.

2estrelas
Atualizado há 4 meses

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COPYRIGHT NOTICE

This file is part of the "Universal Biomedical Skills" project.

Copyright (c) 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu>

All Rights Reserved.

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This code is proprietary and confidential.

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Bowtie2 Alignment

Build Index

# Build index from reference FASTA
bowtie2-build reference.fa reference_index

# With threads (faster)
bow

[Description truncada. Veja o README completo no GitHub.]
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