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bio-workflow-management-nextflow-pipelines

Create scalable, containerized bioinformatics pipelines with Nextflow DSL2 supporting Docker, Singularity, and cloud execution. Use when building portable pipelines with container support, running workflows on cloud platforms (AWS, Google Cloud), or leveraging nf-core community pipelines.

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Atualizado há 4 meses

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Version Compatibility

Reference examples tested with: FastQC 0.12+, MultiQC 1.21+, Nextflow 23.10+, Salmon 1.10+, Snakemake 8.0+, fastp 0.23+

Before using code patterns, verify installed versions match. If versions differ:

  • CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Nextflow Pipelines

**"Create a scalable cont

[Description truncada. Veja o README completo no GitHub.]

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