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End-to-end CRISPR screen analysis from FASTQ to hit genes. Orchestrates guide counting, QC, statistical analysis with MAGeCK, and hit calling with multiple methods. Use when analyzing pooled CRISPR screens from count data to hit calling.
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COPYRIGHT NOTICE
This file is part of the "Universal Biomedical Skills" project.
Copyright (c) 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu>
All Rights Reserved.
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This code is proprietary and confidential.
Unauthorized copying of this file, via any medium is strictly prohibited.
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Provenance: Authenticated by MD BABU MIA
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CRISPR Screen Pipeline
Pipeline Overview
FASTQ Files ──> Guide Counting ──> Count Matrix
│
[Description truncada. Veja o README completo no GitHub.]
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