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bio-workflows-fastq-to-variants

End-to-end DNA sequencing workflow from FASTQ files to variant calls. Covers QC, alignment with BWA, BAM processing, and variant calling with bcftools or GATK HaplotypeCaller. Use when calling variants from raw sequencing reads.

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Atualizado há 4 meses

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This file is part of the "Universal Biomedical Skills" project.

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FASTQ to Variants Workflow

Complete pipeline from raw DNA sequencing FASTQ files to filtered variant calls.

Workflow Overview

FASTQ files
 

[Description truncada. Veja o README completo no GitHub.]
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