Version Compatibility
Reference examples tested with: BWA-MEM2 2.2.1+, Ensembl VEP 111+, GATK 4.5+, bcftools 1.19+, fastp 0.23+, samtools 1.19+
Before using code patterns, verify installed versions match. If versions differ:
- CLI:
<tool> --versionthen<tool> --helpto confirm flags
If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.
FASTQ to Variants Workflow
**"Call variant
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