bio-workflows-genome-annotation-pipeline

Name: bio-workflows-genome-annotation-pipeline
Author: bg-szy

Automação

Autor: bg-szy

End-to-end genome annotation pipeline from assembled contigs to functional annotation, covering repeat masking, gene prediction, and functional assignment for both prokaryotic and eukaryotic genomes. Use when annotating a newly assembled genome from scratch.

2estrelas

Atualizado há 4 meses

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Version Compatibility

Reference examples tested with: BRAKER3 3.0+, BUSCO 5.5+, Bakta 1.9+, Infernal 1.1+, InterProScan 5.66+, Prokka 1.14+, RepeatMasker 4.1+, RepeatModeler 2.0+, eggNOG-mapper 2.1+, pandas 2.2+, tRNAscan-SE 2.0+

Before using code patterns, verify installed versions match. If versions differ:

Python: pip show <package> then help(module.function) to check signatures
CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeEr

[Description truncada. Veja o README completo no GitHub.]

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