bio-workflows-merip-pipeline

Name: bio-workflows-merip-pipeline
Rating: 5 (1 reviews)
Author: bg-szy

Orchestrates an end-to-end MeRIP-seq / m6A-seq analysis from raw FASTQ to differential m6A peak calls and metagene plots, chaining fastp adapter trimming, STAR splice-aware genome alignment (NO deduplication for non-UMI MeRIP), deepTools replicate-concordance + IP-enrichment QC, PreSeq saturation curves for cross-library peak-count comparison, exomePeak2 (transcript-aware Poisson GLM) peak calling

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Atualizado há 15 dias

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Version Compatibility

Reference examples tested with: STAR 2.7.11+, samtools 1.19+, fastp 0.23+, deepTools 3.5+, PreSeq 3.2+, exomePeak2 1.14+ (Bioconductor 3.18+), MACS3 3.0+, ChIPseeker 1.38+, Guitar 2.18+, BSgenome.Hsapiens.UCSC.hg38 1.4+, TxDb.Hsapiens.UCSC.hg38.knownGene 3.18+, HOMER 4.11+.

Before using code patterns, verify installed versions match. If versions differ:

R: packageVersion('<pkg>') then ?function_name to verify parameters
CLI: <tool> --version then `<tool> --he

[Description truncada. Veja o README completo no GitHub.]

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